rs48320938 SNP Detail

Summary

• ID
  rs48320938
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163482135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTGGGAC TACCCAACTT
  GCGCTGATAG TTGAGATTAT CAAATCACAG CACAAGAATG AGTTAATGCA GATTCATAAC
  CAATTACTAT TAACAGTGGA TGACTAGAGC TAGAGAGATG GCTTAGCAGT TAAGTGCAGT
  TGTTTCTCTT GCAGAGGACT AGAGTTCAGT TTCCGGTACC CAACATGGTA GCTCACTACC
  A
  GCCTTAACTC CAGTTCCAGG AATCCAACCT TCTCTTCTGA CCTCTGTAGG TACTAGGCAT
  GCAGGTGGTG TACATACGGA GATGTAGGCA AAACACTCTA CACATAAAAT AATCTAAAAC
  ATTTAAATAC AAAAAAAAAG AAGATGGTTC TAGTCTTATA ACATGGTCTC AGCAACCACT
  TTTACAGCTT TTCCAGACAT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148207554	ENSMUSSNP5661475	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48320938					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163482135 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr569442	regulatory region 569442			1997 bp distal
Rr569443	regulatory region 569443			319 bp proximal
Rr569444	regulatory region 569444			412 bp proximal
Rr569445	regulatory region 569445			1354 bp proximal
Serinc3	serine incorporator 3			Intron
				Noncoding-Transcript-Variant
Tssr27319	transcription start site region 27319			873 bp upstream