rs48321069 SNP Detail

Summary

• ID
  rs48321069
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132794704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTGAGC TCCAGGCTCG
  ACATTTCAAT TGGGTATTTT TCTAAATGTG TTCATTTTTC TTTCCTGGCC CCATTGCTGA
  TGAAATAGCA ACACCATTCA CCTACCTCCA AGCCTAAAGT CTCACCCAAT TCCTTCATCT
  CTCACACCTG CTATCTCCTT CTTTGAAATA GAACCAAAAT CTCATCACTT AGCACCCACA
  Y
  TGCTGCGCTT AGTACTGCTG GACTGGATGT CCCAGGAAGG CTGGTACCTA AGAGGGGGCT
  CCCTTCTCTG AGAAGGGGAG GGGTGGGGAG GGGAGGGATT TGTAAGGATG AGACTCTGAG
  GAGTGGGGGC ACAATCCTGA TGTAAAGTGA ATAAATAAAT AAATTAATGG AAAAAAAACC
  AACTTTCCCT CATTTTCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss135916528	ENSMUSSNP1368262	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs48321069					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132794704 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gstcd	glutathione S-transferase, C-terminal domain containing			Intron
				Noncoding-Transcript-Variant
Rr398028	regulatory region 398028			1952 bp upstream
Rr585500	regulatory region 585500			1521 bp proximal