rs48323040 SNP Detail

Summary

• ID
  rs48323040
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180232190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCT CACAGTAACC CTCCCCAGGG
  Y
  GCCCTGGCTT GGGATGGGAC TAGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146380435	ENSMUSSNP5641002	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320159856	CHEV_1_182334756	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48323040					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180232190 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1109	CpG island 1109	607 bp distal
Gm39712	predicted gene, 39712	within coordinates
Itpkb	inositol 1,4,5-trisphosphate 3-kinase B	Intron
Rr424494	regulatory region 424494	1965 bp proximal
Tssr15539	transcription start site region 15539	877 bp upstream