rs48323169 SNP Detail

Summary

• ID
  rs48323169
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:29939572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TCTTTTTTTT TTTTTTTTTT TTTTTTCTGA GACAGGGTTT
  CTCTGTGCAG CCCTGGCTGT CCTGGAACTC ACTCTGTAGA CCAGGCTGGC CTGGAACTCA
  G
  AAATCTGCCT GTCTCTGCCT CCCAAGTGCT GGGATTAAAG GCATTTGCCA CCACTGCCCT
  GCGTGTTAGA ATTCTTAAAT GTCATGTGGC AAGAGGCTTC A                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148182973	ENSMUSSNP3625759	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48323169					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:29939572 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15670	CpG island 15670	939 bp proximal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Dnajb6	DnaJ heat shock protein family (Hsp40) member B6	1324 bp upstream
Gm5129	predicted gene 5129	760 bp downstream
Gm72214	predicted gene, 72214	1848 bp upstream
Rr377760	regulatory region 377760	671 bp upstream
Rr608877	regulatory region 608877	624 bp proximal
Rr608878	regulatory region 608878	1194 bp proximal
Rr608879	regulatory region 608879	1859 bp proximal
Tssr45546	transcription start site region 45546	1151 bp upstream
Tssr45547	transcription start site region 45547	1165 bp upstream
Tssr45548	transcription start site region 45548	1248 bp upstream
Tssr45549	transcription start site region 45549	1263 bp upstream
Tssr45550	transcription start site region 45550	1393 bp upstream
Tssr45551	transcription start site region 45551	1417 bp upstream
Tssr45552	transcription start site region 45552	1538 bp upstream
Tssr45553	transcription start site region 45553	1877 bp upstream
Tssr50466	transcription start site region 50466	1309 bp downstream
Tssr50467	transcription start site region 50467	1328 bp downstream
Tssr50468	transcription start site region 50468	1354 bp downstream
Tssr50469	transcription start site region 50469	1838 bp downstream