rs48323252 SNP Detail

Summary

• ID
  rs48323252
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180770265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGA CAGTAGCGGG GTAGGTGGCT
  R
  GAGAGTGCCA ATCAAGCCCC GCGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146388084	ENSMUSSNP5122233	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss320160471	CHEV_1_182872831	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48323252					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180770265 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1127	CpG island 1127	within coordinates
Cpgi1128	CpG island 1128	681 bp proximal
Rr424644	regulatory region 424644	1649 bp distal
Rr424645	regulatory region 424645	1296 bp distal
Rr424646	regulatory region 424646	231 bp distal
Rr424647	regulatory region 424647	within coordinates
Rr424648	regulatory region 424648	1179 bp proximal
Rr424649	regulatory region 424649	1312 bp proximal
Rr424650	regulatory region 424650	1346 bp proximal
Rr424651	regulatory region 424651	1915 bp proximal
Tmem63a	transmembrane protein 63a	within coordinates
Tssr324	transcription start site region 324	1357 bp upstream
Tssr10503	transcription start site region 10503	348 bp downstream
Tssr10504	transcription start site region 10504	332 bp downstream
Tssr10505	transcription start site region 10505	255 bp downstream
Tssr10506	transcription start site region 10506	223 bp downstream
Tssr10507	transcription start site region 10507	171 bp downstream