rs48323477 SNP Detail

Summary

• ID
  rs48323477
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77105572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ACTGAGAATT ACTGATTTGG ACAATACTTC TCTTTCGGTT
  TATAAATACA TTTATTTGGG GACATTTAGC TCTCATCTTG GCTCTCTACA TAGTTTTTTG
  K
  TTAGTCTCTT AAGTCTTGGT TCAAAGTTCT TACTTCTGAA CCTTGCCTTC TCTTTCCTGT
  TCACTCTGGA GCTCTGGGGA TAACGTTGTT TCTCATCTGT G                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132447192	ENSMUSSNP2102714	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48323477					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77105572 () rs orientation: forward

Symbol	Name	Function Class
6330571C24Rik	RIKEN cDNA 6330571C24 gene	1540 bp upstream
Cpgi3303	CpG island 3303	947 bp proximal
Gm45027	predicted gene 45027	within coordinates
Rr402749	regulatory region 402749	248 bp downstream
Rr402750	regulatory region 402750	within coordinates
Ssh2	slingshot protein phosphatase 2	1541 bp upstream
Tssr103125	transcription start site region 103125	1425 bp upstream
Tssr103126	transcription start site region 103126	1434 bp upstream