rs48327083 SNP Detail

Summary

• ID
  rs48327083
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51360051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTAAGGAC TGGAAACATA
  CCAGAAGATT TTGATTGGAG TCCTGGTGTC ATTCCTCCTG CTTTTCTTCC TCCTGCTTTT
  TCTCATCCTC ATCGGATACC AGTGTCGTCA CAAAAATAAG GCTAGTAAGT AGAGCATGAG
  TGCCTTGCAT GTCTGGAGGT GTTGGGCAGA GAAAACATGT AGTCTCAAGA CATGTATAAA
  W
  TTCAGAGATA TTGCAATATT TCCCATCTCC TAGAGTATTA GTATAGTCAT AGGAAGGAAT
  TTAACAGTCC CTTTCTTCCA CTTAAAATTT CTATTGTTGG AGCTTTCCCA TCCTCCTAGC
  AGATGCTTTT TCAATTCATG CAGCTCAAAG AGAGGCCAAC TTACAAGTGC TTTCAACAGC
  ACCAGACCCA ACACACAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
ss52289082	NES15304922	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
rs48327083					SNP	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52289082	NES15304922	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51360051 () rs orientation: forward

Symbol	Name	Function Class
Gm40645	predicted gene, 40645	within coordinates
Gm49339	predicted gene, 49339	within coordinates
Lilrb4b	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	within coordinates
Rr227838	regulatory region 227838	1851 bp distal
Tssr93243	transcription start site region 93243	1342 bp downstream
Tssr93244	transcription start site region 93244	1071 bp downstream
Tssr93245	transcription start site region 93245	535 bp downstream
Tssr93246	transcription start site region 93246	350 bp downstream
Tssr93247	transcription start site region 93247	307 bp downstream
Tssr93248	transcription start site region 93248	266 bp downstream
Tssr93249	transcription start site region 93249	100 bp downstream
Tssr93250	transcription start site region 93250	354 bp upstream
Tssr93251	transcription start site region 93251	393 bp upstream
Tssr93252	transcription start site region 93252	496 bp upstream
Tssr93253	transcription start site region 93253	691 bp upstream
Tssr93254	transcription start site region 93254	818 bp upstream
Tssr93255	transcription start site region 93255	1045 bp upstream
Tssr93256	transcription start site region 93256	1157 bp upstream
Tssr93257	transcription start site region 93257	1520 bp upstream
Tssr93258	transcription start site region 93258	1755 bp upstream
Tssr93259	transcription start site region 93259	1797 bp upstream
Tssr97554	transcription start site region 97554	1794 bp downstream