rs48327856 SNP Detail

Summary

• ID
  rs48327856
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117430985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATCTGGG TACCACGGAA
  AGGTTGGTTC AGGAGCTTCA GAGAGAGCGG CTGCAATTGA AGGAGGAGTG GAGCACATTG
  AGCATCCAAC TGGAGGAGCA GGAGAGGAGG TTTCAGGTCG CAGAAGCAGC TCTGTCAAGC
  AGCCAAGAAG AGGTGGTGTG TCTTTGGCAG AAGACTGAAG CCCAGGTGAC CTTACTGGCT
  R
  AGCAAGGAGA CCAGCTCTAT GGGTTAGAGA TGGAACGGGA CGACTCCACA ACCAGCTGCA
  GGAACTGAAG GGCAATATCT GGGTGTTCTG CCACGTGCGC CCTGTCCTCG CAGGGGAATC
  CACTCCATCT CCTGGCTTCC TCGTGTTTCT TCCTGGCCCT GCTGGACCCT CTGATCCCCC
  GACTCGCCTT AGCCTCTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61320212	NES16929032	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs48327856					SNP	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61320212	NES16929032	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117430985 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2233	CpG island 2233	762 bp distal
Gm63651	predicted gene, 63651	within coordinates
Kifc5c-ps	kinesin family member C5C, pseudogene	within coordinates
Rr402265	regulatory region 402265	741 bp upstream
Rr439564	regulatory region 439564	604 bp proximal