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rs48328829 SNP Detail
Summary
  • ID
    rs48328829
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr18:82601643 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAGGTACACT GTGTTTTCTA
GAACAGAGAT TCTAAGACTT CCCAAGAAGT CAGTGCTCTG CAGGGCCCAG GCATAGCTCT
GCCCATGATA CACATAGGAA AAACTGGGTC AGGTCAAGAG AGCTCTCCGG GTGAGGCCAG
GGCCCCTATC CTGGAGGAGG ACATCGCCCA GGTCTGCATC CCTGGTTTCC ACGGCCGCTG
Y
TGTCGCTGTA GGCTGCGCTA CCTCTCAAGC TGATTGGGCA CATCTCATTT TTAATTGCAA
ACTTGGTCTC TAGAAAACCC ATCAATTCAG GGTTTCAAGA GCCTTATCAT GCCCGCATTC
ACACACGCGC CCGTGTGCAG CTAGTGTCTT TTGGTAGCAC TGGCAGGGCG CTTTCCCCAA
GTGGGGGGCA GCTCTTATGC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss401436720 MGP_WTSI_18_82752910 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs48328829 SNP C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss401436720 MGP_WTSI_18_82752910 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr18:82601643 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm58829 predicted gene, 58829 1104 bp downstream
Mbp myelin basic protein within coordinates
Rr541827 regulatory region 541827 147 bp proximal
Tssr152152 transcription start site region 152152 590 bp upstream
Tssr152153 transcription start site region 152153 618 bp upstream
Tssr152154 transcription start site region 152154 732 bp upstream
Tssr152155 transcription start site region 152155 770 bp upstream
Tssr152156 transcription start site region 152156 843 bp upstream
Tssr152157 transcription start site region 152157 894 bp upstream
Tssr152158 transcription start site region 152158 951 bp upstream
Tssr152159 transcription start site region 152159 981 bp upstream
Tssr152160 transcription start site region 152160 1031 bp upstream
Tssr152161 transcription start site region 152161 1048 bp upstream
Tssr152162 transcription start site region 152162 1064 bp upstream
Tssr152163 transcription start site region 152163 1089 bp upstream
Tssr152164 transcription start site region 152164 1129 bp upstream
Tssr152165 transcription start site region 152165 1182 bp upstream
Tssr152166 transcription start site region 152166 1248 bp upstream
Tssr152167 transcription start site region 152167 1263 bp upstream
Tssr152168 transcription start site region 152168 1298 bp upstream
Tssr152169 transcription start site region 152169 1359 bp upstream
Tssr152170 transcription start site region 152170 1440 bp upstream
Tssr152171 transcription start site region 152171 1500 bp upstream
Tssr152172 transcription start site region 152172 1607 bp upstream
Tssr152173 transcription start site region 152173 1630 bp upstream
Tssr152174 transcription start site region 152174 1648 bp upstream
Tssr152175 transcription start site region 152175 1671 bp upstream
Tssr152176 transcription start site region 152176 1880 bp upstream
Tssr154083 transcription start site region 154083 699 bp downstream
Tssr154084 transcription start site region 154084 723 bp downstream
Tssr154085 transcription start site region 154085 995 bp downstream
Tssr154086 transcription start site region 154086 1550 bp downstream
Tssr154087 transcription start site region 154087 1765 bp downstream
Tssr154088 transcription start site region 154088 1805 bp downstream
Tssr154089 transcription start site region 154089 1916 bp downstream
Tssr154090 transcription start site region 154090 1988 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory