rs48329204 SNP Detail

Summary

• ID
  rs48329204
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96434886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGTGTTG GTTCCAGAAG
  CCCTGTTGCT AACCTAGTTA GTGTTGTAAC TCCTGCCCCA TCTAAGTTAT CCCTAAAGAT
  GGAGCTGCCT TGTAGATATT TTGGCTCAGA TGGTATAAGC AGTACATTTA ATGCTTAAAA
  TATTTTCATA AGCAACCGGG GGGTGAAGGG AATGACTCAC TTGGTAAAGT GTATGCTGTG
  Y
  AGACATTAGG ACCTGAGTTT AGACACCCAG CACCTACATC AGGGAGCAAT CCATGCCTGT
  AATTCCAGTG GTCAGGGTCG GGGAGGGGGA ACCAGGAAGA TCCTGGGGCT CTCTGGCTAA
  ATCAGTGGGC TCCAGGTTCA CTGGGAGACC CGGGCTCAAA AAGTAAGGTG GAGAAGCAAT
  GAGAAAAAAC CCTTGATGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132681500	ENSMUSSNP3762316	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss323821013	CHEV_11_96405374	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48329204					SNP	C	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96434886 () rs orientation: forward

Symbol	Name	Function Class
Rr252638	regulatory region 252638	287 bp distal
Rr252639	regulatory region 252639	1716 bp proximal
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104542	transcription start site region 104542	1626 bp downstream
Tssr104543	transcription start site region 104543	659 bp upstream
Tssr104544	transcription start site region 104544	1313 bp upstream
Tssr104545	transcription start site region 104545	1366 bp upstream
Tssr104546	transcription start site region 104546	1374 bp upstream
Tssr104547	transcription start site region 104547	1416 bp upstream
Tssr104548	transcription start site region 104548	1510 bp upstream
Tssr104549	transcription start site region 104549	1523 bp upstream
Tssr104550	transcription start site region 104550	1581 bp upstream
Tssr104551	transcription start site region 104551	1609 bp upstream
Tssr104552	transcription start site region 104552	1630 bp upstream