rs48329883 SNP Detail

Summary

• ID
  rs48329883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125924294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTC ATCCCTCACC ATAGCAGCTT
  Y
  TTTCCTAAAC AGATGGCAAC TGTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145872400	ENSMUSSNP977692	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss322450550	CHEV_7_133468636	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48329883					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125924294 () rs orientation: forward

Symbol	Name	Function Class
D7Csu3	DNA segment, Chr 7, Central Connecticut State University 3	230 bp proximal
D7Csu4	DNA segment, Chr 7, Central Connecticut State University 4	within coordinates
Rr153599	regulatory region 153599	894 bp distal
Rr153600	regulatory region 153600	507 bp proximal
Rr381445	regulatory region 381445	within coordinates
Tssr69016	transcription start site region 69016	1130 bp downstream
Tssr74630	transcription start site region 74630	190 bp upstream