rs48330115 SNP Detail

Summary

• ID
  rs48330115
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129156105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TGACTCTAGC TGCATATGTA TCAAAAGATG GCCTGGTCGG
  CCATCACTGG AAAGAGAGGC CCATTGGACA CGCAAACTTT ATATGCCCCA GTACAGGGGA
  W
  TGCCAGGGCC AAAAAAATGG GAATGGGTGG GTAGGAAAGT GGGGGGCAGG GTGTGGGGGA
  CTTTTGGGCT AGCATTGGAA ATATAATTGA GGAAAATATG T                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133654148	ENSMUSSNP4295647	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48330115					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129156105 () rs orientation: forward

Symbol	Name	Function Class
Clec2d	C-type lectin domain family 2, member d	1473 bp upstream
Gm53342	predicted gene, 53342	within coordinates
Gm68195	predicted gene, 68195	within coordinates
Rr368193	regulatory region 368193	1195 bp upstream
Rr639386	regulatory region 639386	153 bp proximal
Rr639387	regulatory region 639387	983 bp proximal
Rr639388	regulatory region 639388	1329 bp proximal
Rr639389	regulatory region 639389	1484 bp proximal
Tssr59096	transcription start site region 59096	1471 bp upstream
Tssr59097	transcription start site region 59097	1497 bp upstream
Tssr59098	transcription start site region 59098	1775 bp upstream
Tssr59099	transcription start site region 59099	1809 bp upstream
Tssr59100	transcription start site region 59100	1833 bp upstream