rs48330695 SNP Detail

Summary

• ID
  rs48330695
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151996906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGTTCAA GAGCAGCTTG
  AATGAACATG GGCGTGATCC TGTCTCAGCA AACAAACAAA CAGACAAACA AACAAAGGAA
  CAGAAGAGCC ACGCGCTAGG CTGGAGGGCT GGGCTGGAGA GCTGGCCTGA GGCTAACGCT
  AAGGCTAGCA CTACTGCACC AGCAGAGTCT CCAGTGGGGA ACCTGGCAGT TCTGGTCTCC
  R
  GGGCATTCAC ACTCATATGT GCATTCCCAC ACTTCATTAA AAATAACATC TTTGGCCAGG
  CGGTGGTGGC GCACGCCTTT AATCCCAGCA CTTGGGAGGC AGAGACAGGC GGATTTCTGA
  GTTCGAGGCC AGCCTGGTCT ACAGAGTAAG TTCCAGGACA GTCAGGGCTA CACAGAGAAA
  CCCTGTCTGG AAAAACCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136101810	ENSMUSSNP6160635	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48330695					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151996906 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Miga1	mitoguardin 1			Intron
				Noncoding-Transcript-Variant
Tssr32405	transcription start site region 32405			938 bp downstream