rs48330948 SNP Detail

Summary

• ID
  rs48330948
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:19190756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCC CAGCTAAGTT ATAAGAGAGC
  Y
  TTCAGCAGCT GCCCACCCAC CGTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148777433	ENSMUSSNP7203978	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss322523295	CHEV_8_19140740	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48330948					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:19190756 () rs orientation: forward

Symbol	Name	Function Class
Gm45826	predicted gene 45826	38 bp upstream
Spag11b	sperm associated antigen 11B	19 bp upstream
Tssr76531	transcription start site region 76531	11 bp upstream
Tssr76532	transcription start site region 76532	631 bp upstream
Tssr76533	transcription start site region 76533	689 bp upstream
Tssr76534	transcription start site region 76534	707 bp upstream
Tssr76535	transcription start site region 76535	742 bp upstream
Tssr76536	transcription start site region 76536	1864 bp upstream
Tssr80550	transcription start site region 80550	731 bp downstream
Tssr80551	transcription start site region 80551	1918 bp downstream