rs48331331 SNP Detail

Summary

• ID
  rs48331331
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14912735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATTGAGA AGGACATCTC
  AGCAGTTCCC CTCTCCAGAA TATTTTTGCT AAGCTGGAAA CAATGCCCTC CACCAAGGGA
  CAGTTTTCTC CCCAGAGGGA GACAATGGGG CAAGAACTTG GTCTTGCCCC ATGAGCAGTG
  CTTATGGACT GAGCGCTAGG TACATTTCAG GAGGCAGCCA AATACACCAT GTCACCTGAG
  Y
  GCTAACACCA GCTTTTCTAA CCAGGTGGAA AGAGGGCAAT CTTTTCACCC TCCCACTAAG
  TTGCTTTGTC CATGGCTTGA AAAACCTGAC TCTTAAAGTA TCAACTTCTC TAGATGCTAG
  AGAAAGACCC TATGCAAATA AATATCTCCA GAGCTCTTTG AGGCACAGCA AACACTCAGG
  ATGTGGAACT GTGGCTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60540270	NES16561532	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48331331					SNP	T	T	T	T	T	T	C	T	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60540270	NES16561532	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14912735 () rs orientation: forward

Symbol	Name	Function Class
Rr522557	regulatory region 522557	307 bp distal
Rr522558	regulatory region 522558	869 bp proximal
Rr522559	regulatory region 522559	1752 bp proximal
Thbs2	thrombospondin 2	within coordinates
Tssr146500	transcription start site region 146500	1609 bp downstream
Tssr146501	transcription start site region 146501	1750 bp downstream