rs48332478 SNP Detail

Summary

• ID
  rs48332478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:95974892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGCCTGT TGGCTGAAAA
  GAGATCAAAG CCATTAGAGA TAGCCACCTT AGAAAGGAGC TGCCCCAGGT CAGAGGAAAC
  AGGACACTGG GCACATTATG CAGGACGGGG CCTTTGACTT GATCCAGGAA GGAAAAGGAA
  GCTACCAGAC ACTCCACACA ATCTGAACAT GGATTACTGT TGAGAGCACA GTACAGTTTC
  Y
  GTAGCAAACA CCCTCATATT CACAATGGTC TTACAACGAT AGGAGAGCCC CTCCTTCTCC
  CAGTCACTGC TCAGAACCTG AAAAGAAAAC AAACAAAGGG AATCTGTACC TGGCCTTCTT
  CCGAAGTAAC TTCTGAGATT CCGGGTAATG CACTAAAATT TCATTCAAGT CCTTCTTGTC
  CAGTATGAAG AGGTTGGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145641456	ENSMUSSNP4713198	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48332478					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95974892 () rs orientation: forward

Symbol	Name	Function Class
Cngb1	cyclic nucleotide gated channel beta 1	Intron
Rr368591	regulatory region 368591	658 bp downstream
Rr668198	regulatory region 668198	560 bp distal
Rr668199	regulatory region 668199	1573 bp proximal
Rr668200	regulatory region 668200	1778 bp proximal