rs48332907 SNP Detail

Summary

• ID
  rs48332907
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30357869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATACCCAGGC CCCCAAGTGT CCCTACACAG CCCCAGGTCT
  TATCAAACCT ATCAGAAAAT CCCTCCTCAG CCCTGAGTGT CGCACCCCAT CCCCCACCCC
  M
  CCCCCCCAGT CTCAGGAGGC AGCTTCTGCA CTGCACTTAC CAGGTCTGGG AAAAGGCTTT
  TCTGCTCATG AGCTTCCAGT GACAGCCGTC AACTACTAC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146398997	ENSMUSSNP4092479	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48332907					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30357869 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11437	CpG island 11437	1813 bp proximal
Gm74813	predicted gene, 74813	within coordinates
Rr554337	regulatory region 554337	1282 bp proximal
Rr554338	regulatory region 554338	1987 bp proximal
Tssr458	transcription start site region 458	1363 bp downstream
Tssr17127	transcription start site region 17127	1473 bp downstream