rs48333161 SNP Detail

Summary

• ID
  rs48333161
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90866367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGG CCTGATGAAT TTTTACTTAC
  R
  GTTGGTAAGT GCCTCAGATG GTGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148549817	ENSMUSSNP4341123	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48333161					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90866367 () rs orientation: forward

Symbol	Name	Function Class
Epcip	exosomal polycystin 1 interacting protein	327 bp upstream
Gm60345	predicted gene, 60345	within coordinates
Rr519269	regulatory region 519269	345 bp distal
Rr519270	regulatory region 519270	80 bp distal
Tssr142072	transcription start site region 142072	373 bp upstream
Tssr142073	transcription start site region 142073	340 bp upstream
Tssr142074	transcription start site region 142074	320 bp upstream
Tssr142075	transcription start site region 142075	287 bp upstream