rs48333209 SNP Detail

Summary

• ID
  rs48333209
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161404525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCTAGGG GATACTTCAT
  ATTTTACTTC TACTGCAGTC TGCAAATTCC ATCCTAGTGA CTGTGCATAC CTGCAGATAG
  GATCCTTGGT CTATGCACCC TATTGCCTAG GGGCTGATGA CCTATGTGCT CACCCTGTGG
  ATTTCCCTGG AAGAAAATAA TATCATGAGT CTCAGAGCTG CAAAGACCTT TCAAGATCTC
  Y
  GAGACCCGTG TTTGAGTCAA CTCTGATGCA GGCAAGTCAA TGCCTGGCCC AAGGTAGGCA
  GATGGGTGTT TAACACGAGC GATGGAAAGT GTTCCAGTTG GACTGTGCTC TCAAGCCGTC
  TCTGGCAGTA CTCCCCTTGC ACTGACGCTT CTTCCCGGTC TCCAGCAAGA AGATTGTCCC
  TTACCCAGGT TAGAGACAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60336164	NES15834536	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48333209					SNP	T	T	T	T	C	T	C	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60336164	NES15834536	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161404525 () rs orientation: forward

Symbol	Name	Function Class
Gm31815	predicted gene, 31815	within coordinates
Rr421814	regulatory region 421814	523 bp distal