rs48333535 SNP Detail

Summary

• ID
  rs48333535
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3337167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCCTCTC CTTTCCTTTC
  CTTTCCTTCT ATGCCTCCAG TAGAAACTAG GTTAACATTT CTGCTTGCTA CAGGTGGATT
  AGTGCAGGTC TTCTCATTCT GAATTGTCCT ATCATCATTT ACAATTAACC TGCTTTACTG
  ACTGTACCTC TTAACTTGTT TGCTAAGAAA CTGAAGTAAT GCCATTTTCC TACTGTCAAA
  S
  TACTAGAGTT TTGACTGTGC CTTAGTTGGG TTTTTTTGTT GTTTTTTTGT TTTTTGTTTG
  TTTGTTTGTT TGTTTTTTGA GACAGGGTTT CTCTGTGTAG CCCTGGTTGT CCTGGAACTC
  ACTCTGTAGA CCAGGCTGGC CTCGAACCCA GAAATTCACT TGCCTCTGCC TCCCAAGTGC
  TGGGATTAAA GGCGTGCACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60679014	NES16231753	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs48333535					SNP	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60679014	NES16231753	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3337167 () rs orientation: forward

Symbol	Name	Function Class
Alkbh8	alkB homolog 8, tRNA methyltransferase	within coordinates
Rr401236	regulatory region 401236	1942 bp downstream
Rr673628	regulatory region 673628	1679 bp distal
Rr673629	regulatory region 673629	209 bp distal
Tssr83613	transcription start site region 83613	1666 bp downstream
Tssr83614	transcription start site region 83614	1636 bp downstream