rs48334297 SNP Detail

Summary

• ID
  rs48334297
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81336581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCCAGCC TGGGCTACAT
  AATAGAGACA CCCTGTCTAA AAAAAAAATA CAAATACCTA ATAATAATAA TAATAATAAT
  AATAATAATA ATAATAAATA TGTGCCACCA ATACATAGTA GGTGCTTAAA ATCACCTATT
  AAAGAAAAAG TCATCTGCAC ACACCAGGCG CTTAATAAGA TTTTGTTGCC TGTACTAGGG
  R
  TGCTTCATAG TGCTTGTCAA CACACAGCAA ACAGCAGGTG TCTAATCAAT GTGCAAGGAC
  ACCTGTAGCT CCCCTGGCAG TGCCAACTCA GCCTCAGCCT ACACAATTGT TCTGTGCTTT
  GACCCCAGCC TCAACCCCTT CCCTGCACTG AGCCCCAATC CCCAGTCTCA GCTCCTTCCC
  TGCACTGAGC CCCAATCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292391	NES16908692	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48334297					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292391	NES16908692	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81336581 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1994	CpG island 1994	1121 bp distal
Cpgi1995	CpG island 1995	1946 bp proximal
Gna15	guanine nucleotide binding protein, alpha 15	1559 bp downstream
Rr435688	regulatory region 435688	1325 bp distal
S1pr4	sphingosine-1-phosphate receptor 4	615 bp upstream
Tssr98631	transcription start site region 98631	1139 bp upstream
Tssr98632	transcription start site region 98632	1104 bp upstream
Tssr98633	transcription start site region 98633	1077 bp upstream
Tssr98634	transcription start site region 98634	1034 bp upstream