rs48335478 SNP Detail

Summary

• ID
  rs48335478
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:85275445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGTACAGAT GTGTAGAAAT GCTAGGTATG GTTGATTTAT
  CCCTAGTGTT ACTATTATTA GGCCTAGTTG GTTTGATGTG GAGAAGGCGA CGATTTTTTT
  K
  ATGTCGTTTT GGGTGAGAGC ACAAATAGCT GTAAATAATG TGGTTAGGGC TCCGAGGCAT
  AGTATAGTTG TTAAAATAAA GTTATTATTA GTTGTGAGTG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	NZW/LacJ	WSB/EiJ
ss52675561	NES15491886	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	NZW/LacJ	WSB/EiJ
rs48335478					SNP	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52675561	NES15491886	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:85275445 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5915	CpG island 5915	within coordinates
Gm4076	predicted gene 4076	within coordinates
Rr388812	regulatory region 388812	within coordinates
Rr483357	regulatory region 483357	within coordinates
Tssr4134	transcription start site region 4134	444 bp downstream
Tssr120547	transcription start site region 120547	736 bp downstream
Tssr120548	transcription start site region 120548	624 bp downstream
Tssr120549	transcription start site region 120549	557 bp downstream
Tssr123349	transcription start site region 123349	687 bp upstream
Tssr123350	transcription start site region 123350	316 bp upstream
Tssr123351	transcription start site region 123351	222 bp upstream
Tssr123352	transcription start site region 123352	67 bp downstream