rs48335693 SNP Detail

Summary

• ID
  rs48335693
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:68260257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGACTGA ATAACTGCTA
  GATCCTTGGA CTTCCATTTA CAGCTACTAC TGAACCATTG TTGGGGATTG GACTGCAGAC
  TGAAAGTCAT CAATAAATTC CTTTAATATA TAGAGACTAT CCATAAGTTC TGTGACTCTA
  GAGAACCCTA AATAATATAA TACATAACCT CATTTCTAAA AAAAAAAAAA ATTGCTCTAA
  G
  CTGAACAGTC CAGGCGAGCT AAAAATTTCA AGCCTTTTTC TGAGAGTTCT TTTCCTGAAT
  GTTCTCTAAG TGTATAAACA TATGTTAGAG CACTTGTTTG TTTATTCACT TGCCGCTCTA
  TTTTTGTTGT TACTGAGGCT ACAGAGCTAA TTACTCAGAG CTAAACAAAA AATAGTAATA
  AGGTTTTCTT TTTCCAATTT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146487538	ENSMUSSNP6462056	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs48335693					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:68260257 () rs orientation: forward

Symbol	Name	Function Class
Rr376643	regulatory region 376643	126 bp downstream
Rr376644	regulatory region 376644	1015 bp upstream