rs48336843 SNP Detail

Summary

• ID
  rs48336843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127762650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGTGCAC CTATCTACAC
  ACAGGCAAAA CACTCATGTA TATAAAATAA AAACAAGTAC GTCAGTTTGA CCCATGTGCT
  CGGGCAGAAC ATTATGGTAA CAGGGACTTG TGGTGCATTG TGGGACATAC CGGAAGCAGA
  GAGGTCTTGC ACCGACTTTC TCCCGTGCCA CCTCAGTTCC CCTTGGGTTC CTACCCCATG
  Y
  TGGGGCGCTG CTCACATTTG CGCTGGGGCT TCCCCACTCG TGCGAATTCC ACCTGGAAAT
  TCCCTCACGG ACACACCCAG AGTCTGTGCC GCACCGGCCT CCCAGGGATT CTAAATGCAA
  TCAAGCTGGC AGTGAAGACG ATCCACCACA CATTTAGGAT CAAGTTATTT CTGTGCCGAA
  CGCAGGCAGA TTTTTAAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135876635	ENSMUSSNP4519241	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320958783	CHEV_3_127671919	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48336843					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127762650 () rs orientation: forward

Symbol	Name	Function Class
Gm35667	predicted gene, 35667	1920 bp upstream
Gm65460	predicted gene, 65460	within coordinates
Rr52	regulatory region 52	980 bp proximal
Rr584913	regulatory region 584913	1973 bp proximal