rs48337821 SNP Detail

Summary

• ID
  rs48337821
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114270128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGT TTGGGTTTAA ATCATGCGCG
  Y
  ACACACACAA ATAGACGAGG TTTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss149107123	ENSMUSSNP1160184	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321651945	CHEV_5_114582076	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48337821					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114270128 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16310	CpG island 16310	213 bp distal
Gm73235	predicted gene, 73235	618 bp downstream
Gm73237	predicted gene, 73237	1353 bp upstream
Tssr48056	transcription start site region 48056	1691 bp downstream
Tssr48057	transcription start site region 48057	1623 bp downstream
Tssr48058	transcription start site region 48058	889 bp downstream
Tssr48059	transcription start site region 48059	847 bp downstream
Tssr48060	transcription start site region 48060	143 bp upstream
Tssr52695	transcription start site region 52695	1341 bp upstream
Tssr52696	transcription start site region 52696	470 bp upstream
Ung	uracil DNA glycosylase	within coordinates