rs48338181 SNP Detail

Summary

• ID
  rs48338181
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26756131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCTTTTAA AGTCTTCTGG AAACTCTATT AACATCCTTG
  GTGTTTTCTT AATCTTCCTT CTTTCCCATA CAGGTCTTCA CCCTCCATCC CATGACCACA
  R
  CTAAGAGTCT GAACACTTGA TCCCAAATCA GTGGGCTGGG CTACCACCCC CCACCCCCAG
  GCCTTCCTCA TGCTCAGAGA AGAGCGACAA GAAAAATTTT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60554809	NES16569670	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48338181					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60554809	NES16569670	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26756131 () rs orientation: forward

Symbol	Name	Function Class
Gm34606	predicted gene, 34606	793 bp downstream
Gm50275	predicted gene, 50275	within coordinates
Gm64855	predicted gene, 64855	1398 bp downstream
Rr405114	regulatory region 405114	893 bp upstream
Tssr5048	transcription start site region 5048	1800 bp downstream
Tssr5049	transcription start site region 5049	1749 bp upstream
Tssr5050	transcription start site region 5050	1321 bp downstream
Tssr143246	transcription start site region 143246	1173 bp upstream