rs48338238 SNP Detail

Summary

• ID
  rs48338238
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:36392953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGATGGCA TTCAGGATTT TTTTCTTCTA GGTGGGCACT
  CAACTAAGAG ACACTCCAGC CTTCCTAGGA CCAGAAGGGC TGTCATTTAG CGGCCATCTA
  K
  AATACAAACT TGTCTGCCTC CAGGCATAGC CAAGCCACTA CATCCCATCA TACAACTGTA
  AACAGTATAC TGGGCAGTGG GGGCAGGGGG CTAGACTCC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148848852	ENSMUSSNP3654749	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
ss322166703	CHEV_7_37478547	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48338238					SNP	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:36392953 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18883	CpG island 18883	770 bp proximal
Cpgi18884	CpG island 18884	1649 bp proximal
Gm36722	predicted gene, 36722	within coordinates
Gm38285	predicted gene, 38285	1910 bp upstream
Rr645552	regulatory region 645552	676 bp distal
Rr645553	regulatory region 645553	within coordinates
Rr645554	regulatory region 645554	662 bp proximal