rs48338424 SNP Detail

Summary

• ID
  rs48338424
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:68787906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCCCCAA TATCCCTCTG
  TTTCTTGAGT CCTTTTTTTT TTTTTGTGAG CAGTGTACTG TTCTGACTGG AAGTGAAATT
  GGGCCTTATC CAGACACTTT AATTCATTGG AGTGGTGGCC TCTTTCTTTA TAACCCTGAA
  CTCACTTCTA ACATAGATAT AGGTAGAACT CCCTTGAATT TAATTTTGGA CACAGCCCCA
  Y
  CCCATCTCTT ATTGTGCTAT AAGCAAGTGT TTTAATTTCA TCAAGTATGT GTATCACAAC
  AACACTAAAC AGTTGTCCTG GTTGGGGTGT AGTGGAGGGT CTTCCTATTT GGAGTTGCTT
  CTGACAACTT GCTACAAGGC TGTGAGAGAC ATCAACTGCA AACGCCCAAC TGCTGGTTAC
  GATGCTGCCC GTGGCATGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136597032	ENSMUSSNP2039796	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss322996717	CHEV_9_68728431	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48338424					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68787906 () rs orientation: forward

Symbol	Name	Function Class
D9Mit158	DNA segment, Chr 9, Massachusetts Institute of Technology 158	1554 bp proximal
Rora	RAR-related orphan receptor alpha	within coordinates
Rr682079	regulatory region 682079	1345 bp proximal