rs48338527 SNP Detail

Summary

• ID
  rs48338527
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61756447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGCTTTC TCAGGATGTG
  CAATGGAAAA CTGGCAAAAG GAGCGAGTTG GGGGCGGGGG CTGAGGGGGG GCACGCTCCA
  GCCCTCCCCT CTCAGCCTGA TGTCTATCAG CCTGGCCTGG TTTCTGTTAG GCTTTGAGTC
  AGATGTCTTG CCCTCCTGGG TCTGCCGCCC ACTGCTGCTT TCCTGACACC CCCACTTCTC
  K
  GTCTCGGGCC CAGAGAGACT CCCCGCCCCA CTCCCCCCAC CCCGCCCCCA TCCACTTTCC
  CTCCTCCTGC ACTGGACTTC AACAGCCCTG TCTCATTACT AACAAGTTCA AGCATTGTAA
  GGGTGGGTGG GAGCCAAGAG GGCAGGAAAG GAAGGCAGCC TAAATGGCAT CTCTGAAGAC
  AGGAGCTATG GAACCCCCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61280660	NES16779838	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48338527					SNP	T	T	T	G	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61280660	NES16779838	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61756447 () rs orientation: forward

Symbol	Name	Function Class
Col13a1	collagen, type XIII, alpha 1	within coordinates
Gm30121	predicted gene, 30121	within coordinates