rs48338867 SNP Detail

Summary

• ID
  rs48338867
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:83476728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCAAAAAT AAATGTTACA
  AAACATTATA GAATGTATTT CAGGCCACTT GGACCTATAA CCACTTTTAA TTAATGAGAC
  TAAAGGGTTT TTTGTTTCGT TAATTTTTGT CACCTGACAG TGGAGATGAC ACTCAGAAGG
  GCAGAGGCAG GTAGAGCTCT GAATTCAAGA GTAGCCTGGT CTACAGAGTA AGTTTCAGGA
  S
  TCTGGGCCTG CGCAGAGAAA CCCTGTCTCG ATCGAAAGAC AACAGCAAAA TTAAAGTTAT
  TTATAATAGT CTATTAGCCC TAAAAATCAT GAATATATTT TGTCTTCCTT CATCTCTAAC
  AAGATTTCGT TGGTTTTCTA GGGGTTGTAC CCAAGGCATC ACATTCTAGG GGTGAATTCT
  ACCACTGCTC TGTACAGTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss146812170	ENSMUSSNP6537061	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs48338867					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:83476728 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11854	CpG island 11854	1115 bp distal
Rr57102	regulatory region 57102	327 bp distal
Rr397083	regulatory region 397083	1808 bp downstream
Tssr18640	transcription start site region 18640	1894 bp downstream
Tssr18641	transcription start site region 18641	1863 bp downstream
Tssr18642	transcription start site region 18642	1837 bp downstream
Tssr18643	transcription start site region 18643	1807 bp downstream
Tssr18644	transcription start site region 18644	1792 bp downstream
Zc3h15	zinc finger CCCH-type containing 15	within coordinates