rs48339985 SNP Detail

Summary

• ID
  rs48339985
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58411185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCTCCTT GGCTTGCTTA
  GCCTGCTTTC TACAGAACAG AAGACCACCA ACCAGGGATG ACACCACAGT GGGTTAGGTT
  CTCCCCATTG ATCACTAATT GAGAAAATGC CTTATAGCTG GATCTCATAA AGGTATTTCC
  TCAGCTGAAG CTCCTTCCTC TCTGACTTTG TGTCTGGTTG ACTCATAAAG CCAGCCAGTA
  Y
  ACTGGTTTAT CCTGAAATTC TTTTCTGTCT TTCCCTGAGA ATAGCTCCAA AGAATGGCTG
  CTCCTCAGAA TATTCTCAGC TGTGTCTCCT TTCTGCTGCT GCTGTTTCCA GATGTAACTA
  ACAGATGGCT CTGTAAGATT AGTATTTGCA GAAACTGAAC ACAGGGTGGC AATGTGTCAT
  TATTAAAAAT ATTAATGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
ss135206852	ENSMUSSNP506699	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss320783058	CHEV_3_58307686	CHEVERUD	SCREENING_POP	f	SNP			C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
rs48339985					SNP	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58411185 () rs orientation: forward

Symbol	Name	Function Class
Gm66340	predicted gene, 66340	415 bp upstream
Rr375034	regulatory region 375034	265 bp upstream
Rr577237	regulatory region 577237	1537 bp distal
Rr577238	regulatory region 577238	155 bp proximal
Tssr29204	transcription start site region 29204	1579 bp downstream