rs48341237 SNP Detail

Summary

• ID
  rs48341237
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109749794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACCCGTA GAAAAAGAAT
  GGGGTAATTG AGCGGAGGGC AGCTTGTATG GCCCTTTCAG CCTTCTCGTG TTGTGTGGCC
  TATTGCATGA TTAAATCAGG AGCAGTCAAA GACCTGCTAG AGAGGAAGGG GCCCCGAGAG
  GCCCTCTGGC AAAGGAAACT TCCTTTTTAC CTTCAAGCTA TCAAAAGAGA CCTCTTAGGC
  G
  TAGCTTTAAA GGAATAACAG ATCGTGTGAA GGGAAAACTC CCTTTTAGGC AAGCTGGGGC
  ATCACTGTAT TTCCAGGTGG GTGGTGCCGA GGCATTCGGC TGGCCCTCTC AGGTTGGGGA
  TGTGGAGAAC TGAGACCCTT GGCTTTGCAC CCTAGTCTCA GATTTTGGCC CAGTCTTAGG
  TGTTGTTGAT GCCTGGAAAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147206209	ENSMUSSNP6989502	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs48341237					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109749794 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12039	CpG island 12039	588 bp distal
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	Intron
Rr397176	regulatory region 397176	1790 bp downstream
Rr562509	regulatory region 562509	1792 bp distal
Rr562510	regulatory region 562510	within coordinates
Rr562511	regulatory region 562511	1665 bp distal
Rr562512	regulatory region 562512	1626 bp distal
Rr562513	regulatory region 562513	1238 bp distal
Rr562514	regulatory region 562514	572 bp proximal
Tssr19307	transcription start site region 19307	1857 bp downstream
Tssr19308	transcription start site region 19308	1811 bp downstream
Tssr19309	transcription start site region 19309	1793 bp downstream
Tssr19310	transcription start site region 19310	1763 bp downstream
Tssr19311	transcription start site region 19311	1713 bp downstream