rs48341440 SNP Detail

Summary

• ID
  rs48341440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:49012148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCTGGCCT CAAACTCAGA AATCCACCTG CCTCTGCCTC
  CCAAGTGCTG GGATTAAAGG CGTGCACCAC CACCGCCTGG CTGTGTCCAA ACTCTTAGCT
  Y
  ATCTTTCTAG TCTGTTCCCT CCATCTTTTA GGCCTCTGAG GATATTGCAG ACCTGAGATA
  GCTCTTCTCT TCCCTGTGCT CATGGTATGA AGGGGAAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss62763254	NES17343746	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T		T	C		C
ss145722372	ENSMUSSNP2337625	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			C
ss325410141	CHEV_17_48844445	CHEVERUD	SCREENING_POP	f	SNP							C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs48341440					SNP	C	C	C	C	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62763254	NES17343746	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:49012148 () rs orientation: forward

Symbol	Name	Function Class
D17Dcr13	DNA Segment, Chr 17, Derry C. Roopenian 13	1192 bp proximal
D17Mit178	DNA segment, Chr 17, Massachusetts Institute of Technology 178	1192 bp proximal
Rr392702	regulatory region 392702	1834 bp upstream