rs48341902 SNP Detail

Summary

• ID
  rs48341902
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136806005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTA AATGCAAGCA GAGGAGGAAG
  W
  GAAAAACTTC CATCTTCCAA TGTCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133848586	ENSMUSSNP1215175	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss321998863	CHEV_6_136777528	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48341902					SNP	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136806005 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	within coordinates
Cpgi18110	CpG island 18110	584 bp distal
Rr380176	regulatory region 380176	within coordinates
Rr640072	regulatory region 640072	785 bp distal
Rr640073	regulatory region 640073	154 bp distal
Rr640074	regulatory region 640074	within coordinates
Smco3	single-pass membrane protein with coiled-coil domains 3	924 bp downstream
Tssr2044	transcription start site region 2044	527 bp downstream
Tssr59337	transcription start site region 59337	1247 bp downstream
Tssr59338	transcription start site region 59338	1209 bp downstream
Tssr59339	transcription start site region 59339	1196 bp downstream
Tssr59340	transcription start site region 59340	1168 bp downstream
Tssr59341	transcription start site region 59341	551 bp downstream
Tssr59342	transcription start site region 59342	182 bp downstream
Tssr63836	transcription start site region 63836	1263 bp upstream
Tssr63837	transcription start site region 63837	1246 bp upstream
Tssr63838	transcription start site region 63838	1238 bp upstream
Tssr63839	transcription start site region 63839	1182 bp upstream
Tssr63840	transcription start site region 63840	945 bp upstream
Tssr63841	transcription start site region 63841	828 bp upstream
Tssr63842	transcription start site region 63842	810 bp upstream
Wbp11	WW domain binding protein 11	791 bp upstream