rs48342335 SNP Detail

Summary

• ID
  rs48342335
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134127143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GGGAGTACTT GAGTGTTAAG ACTGTCTGCC TACTATGTAC
  AAAGCTCTGG GTTCCATCCC CACCACAGCA TAAACCAGAT GTGGCTCTGT ACAGGCAACC
  R
  AAATGGAGGC GAAAAGATCA GAAGTTCAAG GTTATCTTCA ACTATAGATA GACTTGATGA
  AGGATAACAT GAGATAAACG AGACTCTGTC TCAAAACAAA A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss144500636	ENSMUSSNP4346672	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs48342335					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134127143 () rs orientation: forward

Symbol	Name	Function Class
Castor2	cytosolic arginine sensor for mTORC1 subunit 2	1444 bp upstream
Cpgi16713	CpG island 16713	816 bp proximal
Gm15627	predicted gene 15627	108 bp downstream
Rr621932	regulatory region 621932	362 bp proximal
Rr621933	regulatory region 621933	883 bp proximal
Tssr49079	transcription start site region 49079	1388 bp upstream
Tssr49080	transcription start site region 49080	1400 bp upstream
Tssr49081	transcription start site region 49081	1463 bp upstream