rs48342659 SNP Detail

Summary

• ID
  rs48342659
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:24791380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAC CAGAAAGGAA CTGCTGGGAT
  R
  CATACTTACT GGAAAAAAAA TTTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146998860	ENSMUSSNP3576734	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss323275263	CHEV_10_24635288	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48342659					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24791380 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	mRNA-UTR
Tssr92746	transcription start site region 92746	138 bp upstream
Tssr92747	transcription start site region 92747	211 bp upstream
Tssr97085	transcription start site region 97085	10 bp downstream
Tssr97086	transcription start site region 97086	56 bp downstream
Tssr97087	transcription start site region 97087	90 bp downstream
Tssr97088	transcription start site region 97088	148 bp downstream
Tssr97089	transcription start site region 97089	167 bp downstream
Tssr97090	transcription start site region 97090	198 bp downstream
Tssr97091	transcription start site region 97091	589 bp downstream
Tssr97092	transcription start site region 97092	609 bp downstream
Tssr97093	transcription start site region 97093	633 bp downstream
Tssr97094	transcription start site region 97094	649 bp downstream
Tssr97095	transcription start site region 97095	663 bp downstream
Tssr97096	transcription start site region 97096	928 bp downstream
Tssr97097	transcription start site region 97097	1202 bp downstream
Tssr97098	transcription start site region 97098	1350 bp downstream