rs48344393 SNP Detail

Summary

• ID
  rs48344393
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:31215705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGCATCAT AAATGAAGAT
  GGCTCGAGCC AGGAGAAACC CCAGCCTACC TCCCTACATG ATCTCAACTC CTCAAACTCT
  CTGGTGGTCC AGTGTCTGTC CTTGAAAAAA TTGGTACTGT TTCTTTTATA AAAAAGGTCC
  CAGTTCTTCT GAGCCTCTTT TTCCAGTTTT TGCTGTTTAA AAGCAGACAC CAAAGCTTGG
  Y
  CTCTTTTCAG TTTCTCCTCT TCTTCAGTGC TAAGAATCCT TGCTTGCAGT CCTTTCCTTT
  GGAAAGAAGC CATTGTAGTT GCCGGAAACA CATTCAATGC TGCTATAGGT CCTCTGTTCT
  TCAACCATCT GAACAAACGA TGCTGAGATT GTAGACACTG GAGTTTCTCT GATGCAGTTT
  CCCCAGGTGA CTTTCCAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52709812	NES15559253	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48344393					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52709812	NES15559253	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:31215705 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6292	CpG island 6292	675 bp proximal
Eaf1	ELL associated factor 1	1331 bp upstream
Gm63056	predicted gene, 63056	404 bp downstream
Mettl6	methyltransferase 6, methylcytidine	within coordinates
Rr296978	regulatory region 296978	within coordinates
Tssr124943	transcription start site region 124943	600 bp upstream
Tssr124944	transcription start site region 124944	1317 bp upstream
Tssr124945	transcription start site region 124945	1349 bp upstream
Tssr127965	transcription start site region 127965	509 bp downstream
Tssr127966	transcription start site region 127966	1212 bp downstream
Tssr127967	transcription start site region 127967	1244 bp downstream