rs48345334 SNP Detail

Summary

• ID
  rs48345334
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48124204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCGAGTTT CCACCTCATA
  AAAAAGGGTT TTGTAACACA AGATGAGGCA ATACAAGAGC AAAGTGACTT CCAGCTGAGT
  CACTAAACCA GGGAAGCTGG CTTAGTTTTC CTGAGAGGAA GAGGTTTGGC TAGTCACAAT
  CCTTTGTTTG CAATAAGCGT AGCCATTTAT TTGAGCCAAT CACAGTCTTG CCTCGTAGCA
  K
  CAATCCCAGT GATTGAAGCT TGTGTCTTAG ACCAGTCATA ACTTTACCTC TTAACGCCAG
  GCATCCATCT GCTAGGGCAT CTTCAGGTCA GTGCTTCCCC ACTGGCCAGG CAGAAATGAT
  TCCAGAGTCA TCTAGAAACC ATCAGACAGG ACTTGTGAAA ACAGAAGTCT AGAACCAACT
  GTTTCCAGCT CGCTTTGATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60455094	NES16441066	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48345334					SNP	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60455094	NES16441066	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48124204 () rs orientation: forward

Symbol	Name	Function Class
Tssr138650	transcription start site region 138650	22 bp upstream
Tssr138651	transcription start site region 138651	73 bp upstream