rs48345860 SNP Detail

Summary

• ID
  rs48345860
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40963850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAA GGTTCACGGT ATACAATGGT
  G
  AGATAATTAA TCAGACGGAC AGGGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144660279	ENSMUSSNP2088332	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss322631351	CHEV_8_41596163	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48345860					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40963850 () rs orientation: forward

Symbol	Name	Function Class
Cnot7	CCR4-NOT transcription complex, subunit 7	within coordinates
Cpgi20281	CpG island 20281	27 bp proximal
Rr662586	regulatory region 662586	within coordinates
Rr662587	regulatory region 662587	485 bp proximal
Tssr2553	transcription start site region 2553	407 bp downstream
Tssr2554	transcription start site region 2554	668 bp upstream
Tssr76955	transcription start site region 76955	607 bp upstream
Tssr76956	transcription start site region 76956	960 bp upstream
Tssr76957	transcription start site region 76957	980 bp upstream
Tssr81046	transcription start site region 81046	329 bp upstream
Tssr81047	transcription start site region 81047	449 bp downstream
Tssr81048	transcription start site region 81048	468 bp downstream
Tssr81049	transcription start site region 81049	489 bp downstream
Tssr81050	transcription start site region 81050	854 bp downstream
Vps37a	vacuolar protein sorting 37A	974 bp upstream