rs48347284 SNP Detail

Summary

• ID
  rs48347284
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28853148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAG CAGAAACAAA ATCTCAGAAG
  S
  GGTTGACCAT GTGAGAACTA GAGCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss60987116	NES16140797	PERLEGEN	MM_PANEL2	f	SNP			G			C	G	C	C
ss148642682	ENSMUSSNP1256913	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		G
ss322127372	CHEV_7_29938742	CHEVERUD	SCREENING_POP	f	SNP					C					G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs48347284					SNP	C	C	G	G	C	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60987116	NES16140797	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28853148 () rs orientation: forward

Symbol	Name	Function Class
1110035H17Rik	RIKEN cDNA 1110035H17 gene	1957 bp upstream
Cpgi18740	CpG island 18740	1576 bp proximal
Fam98c	family with sequence similarity 98, member C	within coordinates
Rasgrp4	RAS guanyl releasing protein 4	within coordinates
Rr644490	regulatory region 644490	484 bp proximal
Rr644491	regulatory region 644491	1467 bp proximal
Rr644492	regulatory region 644492	1979 bp proximal
Tssr65599	transcription start site region 65599	1920 bp upstream
Tssr65600	transcription start site region 65600	1948 bp upstream
Tssr71610	transcription start site region 71610	1874 bp downstream
Tssr71611	transcription start site region 71611	1899 bp downstream
Tssr71612	transcription start site region 71612	1994 bp downstream