rs48347376 SNP Detail

Summary

• ID
  rs48347376
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30909505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGTCTGTCT
  GTCTGTCTGT CTGTCTCTCT GTGTTTGTCT ATCTATCTGT CTATCTAATG TCATTCATTG
  TTTTTTACAA AAAGTCATAT AGGATTTTCA TGGGATTGAA GTTACCATTA TCAAAGGCTT
  GCTAAGAAAT CTAAATGAGA TAGCTGGGTG CTTCCTGAGG GGTCCCTGAT AGTATTACAG
  Y
  CCATCAGGTG AAAATCTGGC TCACAAGGAT AGAGAACAGT GGGCTAGCTT TACTGTAAAC
  AGAGATAGCT GATGTGATTT AGATTTTTGG GGCAGTGTCT GGGGAAAGGA AGGGGGCCCT
  ACCCAAGGTC ACACATACTC TGGCATTATA TCCTGGCTTA TTCCCTTAAC ATAAAATACT
  TCTATGTAGG AGGACTAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60988985	NES16133970	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48347376					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60988985	NES16133970	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30909505 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18840	CpG island 18840	1503 bp distal
Gm37292	predicted gene, 37292	966 bp downstream
Gm73020	predicted gene, 73020	within coordinates
Rr645057	regulatory region 645057	1728 bp distal
Rr645058	regulatory region 645058	1092 bp distal
Rr645059	regulatory region 645059	1552 bp distal
Tssr65856	transcription start site region 65856	1717 bp downstream
Tssr65857	transcription start site region 65857	1690 bp downstream