rs48347397 SNP Detail

Summary

• ID
  rs48347397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:55967677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTTCTG ATACCAGTTT
  TTAAAGCTTT TCCACAAAGC CATTTTAAAG TAGACTACAA GTATAGTATT CCTTTTGTAG
  AGAAATGTCT GCCTTGTGGG TTTTCTCTTT TACTGTAAGA ATATATTGGA AATGCTTAAT
  ATCTTTTATC CTCAGGAGTT TTGTCACTTT TTGAATTTCA TTTGCTAGAA ATATTTTCCA
  Y
  TTTAAATTGT GTATAATATA TTAGTAGAAC CTAGGTTTTA TAGTGCCCAG CTCTATATAA
  AAAGTTTATT CCTGTTTTGG CTTGACTCCT GTATAAGTAG TAAATTATTT GAATGTAGGA
  GTCTATAAAA TACAGTTTTT AGCTTTTCCT TTCCTTCATT AGTCCTTTTT ATTTGTTTGT
  TTTTGAGACA GGGTCTCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60465509	NES16460797	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		C	T	T		C
ss325191220	CHEV_16_56147427	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48347397					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60465509	NES16460797	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:55967677 () rs orientation: forward

Symbol	Name	Function Class
Gm49682	predicted gene, 49682	1852 bp downstream
Rr391821	regulatory region 391821	1137 bp downstream
Senp7	SUMO1/sentrin specific peptidase 7	within coordinates