rs48348031 SNP Detail

Summary

• ID
  rs48348031
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109532351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGCTCGG CATTAGAATT
  TACTTACCCT GGGAAACAGG GAGGCTGATA TCTTGCACCA GCAGGTAGAA AACACTTTTA
  GGCTTGTGTC TGGGTTCACC ATGCATTTCT AGCTTGTGAG CCCTGACCTG TGCTCTGTAC
  CTCTTGTGGT GTGGCAGTCC TCCACCTTGT CCTCCTGAGT GATAGACTAC ATATATGCCT
  Y
  TCCCCTGTTC TGGGGTGTAG TCTCTGAGGC CATGTCTTAG AGGAACTGGC TTCTTAGTGC
  TCTGTCTAGA CATCCCCTTA GCTCTAGTCT TCCCATGCAC CTCAGTGGCA GGTGTGGTCT
  TAATTTAGGG AATGAATGAG AAATTCAGTT CAGGACTGAT GTGACCCTCA GGTTAGTTCT
  AGGAGCAAGG CCATTTTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61717758	NES17649255	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48348031					SNP	C	C	C	C	C	C	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61717758	NES17649255	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109532351 () rs orientation: forward

Symbol	Name	Function Class
Meg3	maternally expressed 3	within coordinates
Rr472783	regulatory region 472783	873 bp proximal
Tssr115120	transcription start site region 115120	1241 bp downstream
Tssr115121	transcription start site region 115121	1202 bp downstream
Tssr115122	transcription start site region 115122	1006 bp downstream
Tssr115123	transcription start site region 115123	10 bp upstream
Tssr115124	transcription start site region 115124	401 bp upstream