rs48348646 SNP Detail

Summary

• ID
  rs48348646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:44022833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTATGAAA ATAACACAAG
  ATTAGCATGC TTGCCAAGGT CAAGGTGGAA AGATTTTATG AGTGAATTGC AGGAAGAGAG
  GCAGCCATAT TCAGCCTAGT GTATGGAAAG AAACAACGGG CTTTAAGGAT GGTCACTCTA
  AAGCCGCAGA TGTTCATTCA CAGGATACAG AAAATCTGGA GCCGTAAGGT ATCTTAGCAA
  Y
  GGTCAGCTCT TCTAGCAAAA GAGGCACTTC CCCATCCTAC CCTACTTCCC ATTTCTCCCT
  CTATAGCTTT GCTTTTATAC GAGTTTTAAA CTCATGTTTG AGACAAGTAA CATAGTAGTC
  TCCTTTATCC TGAGACGAGG GAAGATAATT TCAAGACAGC CCACTGGACA CCTGAAACTG
  TGGACGATAC CAAACCCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147091189	ENSMUSSNP7092583	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48348646					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:44022833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1509	CpG island 1509	1620 bp proximal
Crybg1	crystallin beta-gamma domain containing 1	within coordinates
D10Mit38	DNA segment, Chr 10, Massachusetts Institute of Technology 38	752 bp distal
Gm67081	predicted gene, 67081	1221 bp upstream
Tssr97502	transcription start site region 97502	1950 bp downstream
Tssr97503	transcription start site region 97503	1979 bp downstream