rs48348774 SNP Detail

Summary

• ID
  rs48348774
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29299965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAAGGAG AGAGGATGGC
  TAGCGGACTA GATCTGGTCA GAGAGAAGCA GAAGGGGGCA GGACATAGAT GGAGAGCGAG
  AAGGGGGAGG AGGAAGACAG AAAAAGGGCG GGGACAAGAG GGAGCAGGGC TGAAATGGTT
  ACAGGACAAA GGAGTAGCTG AGGGGAGGGA GTTTAGGGGA GGAGGTGAGA AACTCCTTGC
  R
  ACCCGAACCA GTGATACGGA GCCTGGAGAC CAGCATGGCC TTTGGTATGC TAACAGGCAT
  CACAGATAGC CATTTATCAC TTCTGCCAGC GATAAGGGAA ATGGTTCCTT TGAAATGGGA
  AACTGGCTTC ACAGGTGACT AAGGAATGCT GGCTTTTGCC TAGCAGCCAG AGTCCAGGGA
  GCTGGAGTTT CCTTTGGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60559216	NES16575493	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48348774					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60559216	NES16575493	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29299965 () rs orientation: forward

Symbol	Name	Function Class
Rr370203	regulatory region 370203	1009 bp upstream
Rr392491	regulatory region 392491	1056 bp downstream
Rr524788	regulatory region 524788	1450 bp distal
Rr524789	regulatory region 524789	within coordinates
Trp53cor1	tumor protein p53 pathway corepressor 1	1865 bp upstream
Tssr143493	transcription start site region 143493	585 bp upstream
Tssr147174	transcription start site region 147174	1997 bp upstream
Tssr147175	transcription start site region 147175	1950 bp upstream
Tssr147176	transcription start site region 147176	1916 bp upstream
Tssr147177	transcription start site region 147177	1858 bp upstream
Tssr147178	transcription start site region 147178	135 bp upstream