rs48349093 SNP Detail

Summary

• ID
  rs48349093
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:21347302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAAGTCTG AGCATTAAAT
  TCAGACTACC CACAGCACCT TATCCATACT AATTACAAAG GTGCCCGTTC GGATGGTTCC
  TCTGCGCAGG TCTTAAAGTG GTAAAGACTG ATGAGGTAAG TTGTTCAAGG TCACAATTCT
  AATTAGTACT TGGTGACTTC CTTCCCTGCT GACCCAGTGC TCCTGATACT GCTTGTCACA
  Y
  ATCAGACTTG GTTTATGCAG TGCTTCTTAG TATTTCCCAG TGGTGTGCTC ATAGACAGTA
  ATTAGTTTCC CAAATATAGT TCCTGATATG ACTGTTGCCA TTTATGTAAA TTTATGTAAA
  TAAATAAGGT GAAAATAAAA CATGTCAGAA CTCTACTCTT TTATCAGTGG AGTGACTGTT
  TTGCTCAGTC CGGTAACAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63676864	NES17069261	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48349093					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63676864	NES17069261	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:21347302 () rs orientation: forward

Symbol	Name	Function Class
D16Mit208	DNA Segment, Chr 16 Massachusetts Institute of Technology 208	1935 bp proximal
Gm60958	predicted gene, 60958	923 bp upstream
Rr326065	regulatory region 326065	within coordinates
Tssr137513	transcription start site region 137513	1081 bp downstream
Vps8	VPS8 CORVET complex subunit	within coordinates