rs48349689 SNP Detail

Summary

• ID
  rs48349689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164268003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATGTCCG TCACAGAACA
  GGACATTCAG ATGTAGAAGA CAGAACTCAC ACAGTGGGCC AGGCTGTGGC TCTGTGACAC
  AGGTGCCACT GAAAGTGATG AGCGGTATTA AAAGCAAATG ACCGGGAGAG CAGAAACTGG
  CTTCGGGCTT CCTTCATAAA CCACAGCAGT TCCTCCTTTT GCTAGATTAC CCTAGCCATG
  Y
  GAGTCAAGTA CAAGCGTGGG GTAGTAGTCC TAACCACAGT ACTTCCCATT GCATGCTTGT
  CTCTGTGGGA AGATTAAATA TCTGTTGAAA GGTACACTAA CATTCGCAAG AGATCCTTCA
  AGACAAGCAG CCAGCCAGCC AGCCACTGAC AACTTGTTCC TGTCTCTGGT TGCATAAAGG
  AGCTTTGATG CATCTTTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60337233	NES15839925	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48349689					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60337233	NES15839925	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164268003 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Tssr9784	transcription start site region 9784	1927 bp downstream
Tssr14741	transcription start site region 14741	1937 bp upstream
Tssr14742	transcription start site region 14742	1895 bp upstream
Tssr14743	transcription start site region 14743	1124 bp downstream
Tssr14744	transcription start site region 14744	1173 bp downstream