rs48353204 SNP Detail

Summary

• ID
  rs48353204
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28851564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAT CTATGCGGCC CAGGCAGCCT
  Y
  CTTTCTCTGC TTGGTCCCAG GAGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137506916	ENSMUSSNP292063	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48353204					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28851564 () rs orientation: forward

Symbol	Name	Function Class
Eipr1	EARP complex and GARP complex interacting protein 1	within coordinates
Rr464343	regulatory region 464343	767 bp distal
Rr464344	regulatory region 464344	1377 bp proximal
Tssr3815	transcription start site region 3815	856 bp downstream
Tssr113054	transcription start site region 113054	656 bp upstream