rs48353439 SNP Detail

Summary

• ID
  rs48353439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170785758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTT CAAGGAAAGA TAGGTTTTCA
  Y
  TGACCTCTTG AGATTCAGAA AGTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146148855	ENSMUSSNP3423772	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320114970	CHEV_1_172888320	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48353439					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170785758 () rs orientation: forward

Symbol	Name	Function Class
Fcgr2b	Fc receptor, IgG, low affinity IIb	428 bp downstream
Gm70986	predicted gene, 70986	within coordinates
Rr20517	regulatory region 20517	643 bp proximal
Rr20518	regulatory region 20518	1243 bp proximal
Rr20519	regulatory region 20519	1642 bp proximal
Tssr284	transcription start site region 284	1705 bp downstream
Tssr14949	transcription start site region 14949	706 bp downstream
Tssr14950	transcription start site region 14950	1550 bp downstream
Tssr14951	transcription start site region 14951	1628 bp downstream
Tssr14952	transcription start site region 14952	1885 bp downstream
Tssr14953	transcription start site region 14953	1900 bp downstream