rs48354990 SNP Detail

Summary

• ID
  rs48354990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:12218018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGCTGGG ATTAAAGGTG
  TGTGCTACCA CTGCCCGGCA GGAGACATTT TTTAAACTTC AAAATTTGAG GGACATTAAA
  ATACAGTCAA ATGAGAAACT CCAAAGGGAA GAGAAAAGAG GTGAGGTGCA GTTTGTAAGG
  CTCCAGGAGT CTTCTGGCCT CCTCCCCTGT GGTGCGGGCT GCAGCAGCTC CGTCCTTGCT
  Y
  GTGTCTTTGT ACAATGTCTA TGTGTCTGTT CTCCAGCAGA GAAAGGCTGA AGCCCCCCCC
  CCCTCCCCAG CGTCAGGCTC TTGCGCCACC CACTCACTGG TCTTGTTGAG TGCTGCTGGC
  TTCAGACAGA GAAGGATGTG TGAGGCCCAT TTCAGGATAG GATCTCTTCT CAGAAGGCAG
  CTGCAGGGAG GCATCCCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52532026	NES15597927	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	T	T	T	T	C	T	C	C
ss147080817	ENSMUSSNP1172537	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48354990					SNP	C	C	T	T	T	C	T	T	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52532026	NES15597927	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:12218018 () rs orientation: forward

Symbol	Name	Function Class
D15Mit1005	DNA segment, Chr 15, Massachusetts Institute of Technology 1005	386 bp proximal
D15Mit1006	DNA segment, Chr 15, Massachusetts Institute of Technology 1006	250 bp proximal
Mtmr12	myotubularin related protein 12	within coordinates